Removing mice which were euthanized early did not significantly change the R2 or MSE

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Modeled with OTUs with max rel abund > 1% (216 OTUs) When modeling based on mean rel abund > 1% (22 OTUs), R^2 decreases ~0.1 and MSE increases ~ 1 and lose all coriobacteriaceae/Actinobacteria

Otus associated with CFU C difficile and same day OTU

Day 0 OTUs associated with C difficile CFU